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- /*
- * Copyright (c) Yann Collet, Facebook, Inc.
- * All rights reserved.
- *
- * This source code is licensed under both the BSD-style license (found in the
- * LICENSE file in the root directory of this source tree) and the GPLv2 (found
- * in the COPYING file in the root directory of this source tree).
- * You may select, at your option, one of the above-listed licenses.
- */
- /* *****************************************************************************
- * Constructs a dictionary using a heuristic based on the following paper:
- *
- * Liao, Petri, Moffat, Wirth
- * Effective Construction of Relative Lempel-Ziv Dictionaries
- * Published in WWW 2016.
- *
- * Adapted from code originally written by @ot (Giuseppe Ottaviano).
- ******************************************************************************/
- /*-*************************************
- * Dependencies
- ***************************************/
- #include <stdio.h> /* fprintf */
- #include <stdlib.h> /* malloc, free, qsort */
- #include <string.h> /* memset */
- #include <time.h> /* clock */
- #ifndef ZDICT_STATIC_LINKING_ONLY
- # define ZDICT_STATIC_LINKING_ONLY
- #endif
- #include "../common/mem.h" /* read */
- #include "../common/pool.h"
- #include "../common/threading.h"
- #include "../common/zstd_internal.h" /* includes zstd.h */
- #include "../zdict.h"
- #include "cover.h"
- /*-*************************************
- * Constants
- ***************************************/
- /**
- * There are 32bit indexes used to ref samples, so limit samples size to 4GB
- * on 64bit builds.
- * For 32bit builds we choose 1 GB.
- * Most 32bit platforms have 2GB user-mode addressable space and we allocate a large
- * contiguous buffer, so 1GB is already a high limit.
- */
- #define COVER_MAX_SAMPLES_SIZE (sizeof(size_t) == 8 ? ((unsigned)-1) : ((unsigned)1 GB))
- #define COVER_DEFAULT_SPLITPOINT 1.0
- /*-*************************************
- * Console display
- ***************************************/
- #ifndef LOCALDISPLAYLEVEL
- static int g_displayLevel = 0;
- #endif
- #undef DISPLAY
- #define DISPLAY(...) \
- { \
- fprintf(stderr, __VA_ARGS__); \
- fflush(stderr); \
- }
- #undef LOCALDISPLAYLEVEL
- #define LOCALDISPLAYLEVEL(displayLevel, l, ...) \
- if (displayLevel >= l) { \
- DISPLAY(__VA_ARGS__); \
- } /* 0 : no display; 1: errors; 2: default; 3: details; 4: debug */
- #undef DISPLAYLEVEL
- #define DISPLAYLEVEL(l, ...) LOCALDISPLAYLEVEL(g_displayLevel, l, __VA_ARGS__)
- #ifndef LOCALDISPLAYUPDATE
- static const clock_t g_refreshRate = CLOCKS_PER_SEC * 15 / 100;
- static clock_t g_time = 0;
- #endif
- #undef LOCALDISPLAYUPDATE
- #define LOCALDISPLAYUPDATE(displayLevel, l, ...) \
- if (displayLevel >= l) { \
- if ((clock() - g_time > g_refreshRate) || (displayLevel >= 4)) { \
- g_time = clock(); \
- DISPLAY(__VA_ARGS__); \
- } \
- }
- #undef DISPLAYUPDATE
- #define DISPLAYUPDATE(l, ...) LOCALDISPLAYUPDATE(g_displayLevel, l, __VA_ARGS__)
- /*-*************************************
- * Hash table
- ***************************************
- * A small specialized hash map for storing activeDmers.
- * The map does not resize, so if it becomes full it will loop forever.
- * Thus, the map must be large enough to store every value.
- * The map implements linear probing and keeps its load less than 0.5.
- */
- #define MAP_EMPTY_VALUE ((U32)-1)
- typedef struct COVER_map_pair_t_s {
- U32 key;
- U32 value;
- } COVER_map_pair_t;
- typedef struct COVER_map_s {
- COVER_map_pair_t *data;
- U32 sizeLog;
- U32 size;
- U32 sizeMask;
- } COVER_map_t;
- /**
- * Clear the map.
- */
- static void COVER_map_clear(COVER_map_t *map) {
- memset(map->data, MAP_EMPTY_VALUE, map->size * sizeof(COVER_map_pair_t));
- }
- /**
- * Initializes a map of the given size.
- * Returns 1 on success and 0 on failure.
- * The map must be destroyed with COVER_map_destroy().
- * The map is only guaranteed to be large enough to hold size elements.
- */
- static int COVER_map_init(COVER_map_t *map, U32 size) {
- map->sizeLog = ZSTD_highbit32(size) + 2;
- map->size = (U32)1 << map->sizeLog;
- map->sizeMask = map->size - 1;
- map->data = (COVER_map_pair_t *)malloc(map->size * sizeof(COVER_map_pair_t));
- if (!map->data) {
- map->sizeLog = 0;
- map->size = 0;
- return 0;
- }
- COVER_map_clear(map);
- return 1;
- }
- /**
- * Internal hash function
- */
- static const U32 COVER_prime4bytes = 2654435761U;
- static U32 COVER_map_hash(COVER_map_t *map, U32 key) {
- return (key * COVER_prime4bytes) >> (32 - map->sizeLog);
- }
- /**
- * Helper function that returns the index that a key should be placed into.
- */
- static U32 COVER_map_index(COVER_map_t *map, U32 key) {
- const U32 hash = COVER_map_hash(map, key);
- U32 i;
- for (i = hash;; i = (i + 1) & map->sizeMask) {
- COVER_map_pair_t *pos = &map->data[i];
- if (pos->value == MAP_EMPTY_VALUE) {
- return i;
- }
- if (pos->key == key) {
- return i;
- }
- }
- }
- /**
- * Returns the pointer to the value for key.
- * If key is not in the map, it is inserted and the value is set to 0.
- * The map must not be full.
- */
- static U32 *COVER_map_at(COVER_map_t *map, U32 key) {
- COVER_map_pair_t *pos = &map->data[COVER_map_index(map, key)];
- if (pos->value == MAP_EMPTY_VALUE) {
- pos->key = key;
- pos->value = 0;
- }
- return &pos->value;
- }
- /**
- * Deletes key from the map if present.
- */
- static void COVER_map_remove(COVER_map_t *map, U32 key) {
- U32 i = COVER_map_index(map, key);
- COVER_map_pair_t *del = &map->data[i];
- U32 shift = 1;
- if (del->value == MAP_EMPTY_VALUE) {
- return;
- }
- for (i = (i + 1) & map->sizeMask;; i = (i + 1) & map->sizeMask) {
- COVER_map_pair_t *const pos = &map->data[i];
- /* If the position is empty we are done */
- if (pos->value == MAP_EMPTY_VALUE) {
- del->value = MAP_EMPTY_VALUE;
- return;
- }
- /* If pos can be moved to del do so */
- if (((i - COVER_map_hash(map, pos->key)) & map->sizeMask) >= shift) {
- del->key = pos->key;
- del->value = pos->value;
- del = pos;
- shift = 1;
- } else {
- ++shift;
- }
- }
- }
- /**
- * Destroys a map that is inited with COVER_map_init().
- */
- static void COVER_map_destroy(COVER_map_t *map) {
- if (map->data) {
- free(map->data);
- }
- map->data = NULL;
- map->size = 0;
- }
- /*-*************************************
- * Context
- ***************************************/
- typedef struct {
- const BYTE *samples;
- size_t *offsets;
- const size_t *samplesSizes;
- size_t nbSamples;
- size_t nbTrainSamples;
- size_t nbTestSamples;
- U32 *suffix;
- size_t suffixSize;
- U32 *freqs;
- U32 *dmerAt;
- unsigned d;
- } COVER_ctx_t;
- /* We need a global context for qsort... */
- static COVER_ctx_t *g_coverCtx = NULL;
- /*-*************************************
- * Helper functions
- ***************************************/
- /**
- * Returns the sum of the sample sizes.
- */
- size_t COVER_sum(const size_t *samplesSizes, unsigned nbSamples) {
- size_t sum = 0;
- unsigned i;
- for (i = 0; i < nbSamples; ++i) {
- sum += samplesSizes[i];
- }
- return sum;
- }
- /**
- * Returns -1 if the dmer at lp is less than the dmer at rp.
- * Return 0 if the dmers at lp and rp are equal.
- * Returns 1 if the dmer at lp is greater than the dmer at rp.
- */
- static int COVER_cmp(COVER_ctx_t *ctx, const void *lp, const void *rp) {
- U32 const lhs = *(U32 const *)lp;
- U32 const rhs = *(U32 const *)rp;
- return memcmp(ctx->samples + lhs, ctx->samples + rhs, ctx->d);
- }
- /**
- * Faster version for d <= 8.
- */
- static int COVER_cmp8(COVER_ctx_t *ctx, const void *lp, const void *rp) {
- U64 const mask = (ctx->d == 8) ? (U64)-1 : (((U64)1 << (8 * ctx->d)) - 1);
- U64 const lhs = MEM_readLE64(ctx->samples + *(U32 const *)lp) & mask;
- U64 const rhs = MEM_readLE64(ctx->samples + *(U32 const *)rp) & mask;
- if (lhs < rhs) {
- return -1;
- }
- return (lhs > rhs);
- }
- /**
- * Same as COVER_cmp() except ties are broken by pointer value
- * NOTE: g_coverCtx must be set to call this function. A global is required because
- * qsort doesn't take an opaque pointer.
- */
- static int WIN_CDECL COVER_strict_cmp(const void *lp, const void *rp) {
- int result = COVER_cmp(g_coverCtx, lp, rp);
- if (result == 0) {
- result = lp < rp ? -1 : 1;
- }
- return result;
- }
- /**
- * Faster version for d <= 8.
- */
- static int WIN_CDECL COVER_strict_cmp8(const void *lp, const void *rp) {
- int result = COVER_cmp8(g_coverCtx, lp, rp);
- if (result == 0) {
- result = lp < rp ? -1 : 1;
- }
- return result;
- }
- /**
- * Returns the first pointer in [first, last) whose element does not compare
- * less than value. If no such element exists it returns last.
- */
- static const size_t *COVER_lower_bound(const size_t *first, const size_t *last,
- size_t value) {
- size_t count = last - first;
- while (count != 0) {
- size_t step = count / 2;
- const size_t *ptr = first;
- ptr += step;
- if (*ptr < value) {
- first = ++ptr;
- count -= step + 1;
- } else {
- count = step;
- }
- }
- return first;
- }
- /**
- * Generic groupBy function.
- * Groups an array sorted by cmp into groups with equivalent values.
- * Calls grp for each group.
- */
- static void
- COVER_groupBy(const void *data, size_t count, size_t size, COVER_ctx_t *ctx,
- int (*cmp)(COVER_ctx_t *, const void *, const void *),
- void (*grp)(COVER_ctx_t *, const void *, const void *)) {
- const BYTE *ptr = (const BYTE *)data;
- size_t num = 0;
- while (num < count) {
- const BYTE *grpEnd = ptr + size;
- ++num;
- while (num < count && cmp(ctx, ptr, grpEnd) == 0) {
- grpEnd += size;
- ++num;
- }
- grp(ctx, ptr, grpEnd);
- ptr = grpEnd;
- }
- }
- /*-*************************************
- * Cover functions
- ***************************************/
- /**
- * Called on each group of positions with the same dmer.
- * Counts the frequency of each dmer and saves it in the suffix array.
- * Fills `ctx->dmerAt`.
- */
- static void COVER_group(COVER_ctx_t *ctx, const void *group,
- const void *groupEnd) {
- /* The group consists of all the positions with the same first d bytes. */
- const U32 *grpPtr = (const U32 *)group;
- const U32 *grpEnd = (const U32 *)groupEnd;
- /* The dmerId is how we will reference this dmer.
- * This allows us to map the whole dmer space to a much smaller space, the
- * size of the suffix array.
- */
- const U32 dmerId = (U32)(grpPtr - ctx->suffix);
- /* Count the number of samples this dmer shows up in */
- U32 freq = 0;
- /* Details */
- const size_t *curOffsetPtr = ctx->offsets;
- const size_t *offsetsEnd = ctx->offsets + ctx->nbSamples;
- /* Once *grpPtr >= curSampleEnd this occurrence of the dmer is in a
- * different sample than the last.
- */
- size_t curSampleEnd = ctx->offsets[0];
- for (; grpPtr != grpEnd; ++grpPtr) {
- /* Save the dmerId for this position so we can get back to it. */
- ctx->dmerAt[*grpPtr] = dmerId;
- /* Dictionaries only help for the first reference to the dmer.
- * After that zstd can reference the match from the previous reference.
- * So only count each dmer once for each sample it is in.
- */
- if (*grpPtr < curSampleEnd) {
- continue;
- }
- freq += 1;
- /* Binary search to find the end of the sample *grpPtr is in.
- * In the common case that grpPtr + 1 == grpEnd we can skip the binary
- * search because the loop is over.
- */
- if (grpPtr + 1 != grpEnd) {
- const size_t *sampleEndPtr =
- COVER_lower_bound(curOffsetPtr, offsetsEnd, *grpPtr);
- curSampleEnd = *sampleEndPtr;
- curOffsetPtr = sampleEndPtr + 1;
- }
- }
- /* At this point we are never going to look at this segment of the suffix
- * array again. We take advantage of this fact to save memory.
- * We store the frequency of the dmer in the first position of the group,
- * which is dmerId.
- */
- ctx->suffix[dmerId] = freq;
- }
- /**
- * Selects the best segment in an epoch.
- * Segments of are scored according to the function:
- *
- * Let F(d) be the frequency of dmer d.
- * Let S_i be the dmer at position i of segment S which has length k.
- *
- * Score(S) = F(S_1) + F(S_2) + ... + F(S_{k-d+1})
- *
- * Once the dmer d is in the dictionary we set F(d) = 0.
- */
- static COVER_segment_t COVER_selectSegment(const COVER_ctx_t *ctx, U32 *freqs,
- COVER_map_t *activeDmers, U32 begin,
- U32 end,
- ZDICT_cover_params_t parameters) {
- /* Constants */
- const U32 k = parameters.k;
- const U32 d = parameters.d;
- const U32 dmersInK = k - d + 1;
- /* Try each segment (activeSegment) and save the best (bestSegment) */
- COVER_segment_t bestSegment = {0, 0, 0};
- COVER_segment_t activeSegment;
- /* Reset the activeDmers in the segment */
- COVER_map_clear(activeDmers);
- /* The activeSegment starts at the beginning of the epoch. */
- activeSegment.begin = begin;
- activeSegment.end = begin;
- activeSegment.score = 0;
- /* Slide the activeSegment through the whole epoch.
- * Save the best segment in bestSegment.
- */
- while (activeSegment.end < end) {
- /* The dmerId for the dmer at the next position */
- U32 newDmer = ctx->dmerAt[activeSegment.end];
- /* The entry in activeDmers for this dmerId */
- U32 *newDmerOcc = COVER_map_at(activeDmers, newDmer);
- /* If the dmer isn't already present in the segment add its score. */
- if (*newDmerOcc == 0) {
- /* The paper suggest using the L-0.5 norm, but experiments show that it
- * doesn't help.
- */
- activeSegment.score += freqs[newDmer];
- }
- /* Add the dmer to the segment */
- activeSegment.end += 1;
- *newDmerOcc += 1;
- /* If the window is now too large, drop the first position */
- if (activeSegment.end - activeSegment.begin == dmersInK + 1) {
- U32 delDmer = ctx->dmerAt[activeSegment.begin];
- U32 *delDmerOcc = COVER_map_at(activeDmers, delDmer);
- activeSegment.begin += 1;
- *delDmerOcc -= 1;
- /* If this is the last occurrence of the dmer, subtract its score */
- if (*delDmerOcc == 0) {
- COVER_map_remove(activeDmers, delDmer);
- activeSegment.score -= freqs[delDmer];
- }
- }
- /* If this segment is the best so far save it */
- if (activeSegment.score > bestSegment.score) {
- bestSegment = activeSegment;
- }
- }
- {
- /* Trim off the zero frequency head and tail from the segment. */
- U32 newBegin = bestSegment.end;
- U32 newEnd = bestSegment.begin;
- U32 pos;
- for (pos = bestSegment.begin; pos != bestSegment.end; ++pos) {
- U32 freq = freqs[ctx->dmerAt[pos]];
- if (freq != 0) {
- newBegin = MIN(newBegin, pos);
- newEnd = pos + 1;
- }
- }
- bestSegment.begin = newBegin;
- bestSegment.end = newEnd;
- }
- {
- /* Zero out the frequency of each dmer covered by the chosen segment. */
- U32 pos;
- for (pos = bestSegment.begin; pos != bestSegment.end; ++pos) {
- freqs[ctx->dmerAt[pos]] = 0;
- }
- }
- return bestSegment;
- }
- /**
- * Check the validity of the parameters.
- * Returns non-zero if the parameters are valid and 0 otherwise.
- */
- static int COVER_checkParameters(ZDICT_cover_params_t parameters,
- size_t maxDictSize) {
- /* k and d are required parameters */
- if (parameters.d == 0 || parameters.k == 0) {
- return 0;
- }
- /* k <= maxDictSize */
- if (parameters.k > maxDictSize) {
- return 0;
- }
- /* d <= k */
- if (parameters.d > parameters.k) {
- return 0;
- }
- /* 0 < splitPoint <= 1 */
- if (parameters.splitPoint <= 0 || parameters.splitPoint > 1){
- return 0;
- }
- return 1;
- }
- /**
- * Clean up a context initialized with `COVER_ctx_init()`.
- */
- static void COVER_ctx_destroy(COVER_ctx_t *ctx) {
- if (!ctx) {
- return;
- }
- if (ctx->suffix) {
- free(ctx->suffix);
- ctx->suffix = NULL;
- }
- if (ctx->freqs) {
- free(ctx->freqs);
- ctx->freqs = NULL;
- }
- if (ctx->dmerAt) {
- free(ctx->dmerAt);
- ctx->dmerAt = NULL;
- }
- if (ctx->offsets) {
- free(ctx->offsets);
- ctx->offsets = NULL;
- }
- }
- /**
- * Prepare a context for dictionary building.
- * The context is only dependent on the parameter `d` and can used multiple
- * times.
- * Returns 0 on success or error code on error.
- * The context must be destroyed with `COVER_ctx_destroy()`.
- */
- static size_t COVER_ctx_init(COVER_ctx_t *ctx, const void *samplesBuffer,
- const size_t *samplesSizes, unsigned nbSamples,
- unsigned d, double splitPoint) {
- const BYTE *const samples = (const BYTE *)samplesBuffer;
- const size_t totalSamplesSize = COVER_sum(samplesSizes, nbSamples);
- /* Split samples into testing and training sets */
- const unsigned nbTrainSamples = splitPoint < 1.0 ? (unsigned)((double)nbSamples * splitPoint) : nbSamples;
- const unsigned nbTestSamples = splitPoint < 1.0 ? nbSamples - nbTrainSamples : nbSamples;
- const size_t trainingSamplesSize = splitPoint < 1.0 ? COVER_sum(samplesSizes, nbTrainSamples) : totalSamplesSize;
- const size_t testSamplesSize = splitPoint < 1.0 ? COVER_sum(samplesSizes + nbTrainSamples, nbTestSamples) : totalSamplesSize;
- /* Checks */
- if (totalSamplesSize < MAX(d, sizeof(U64)) ||
- totalSamplesSize >= (size_t)COVER_MAX_SAMPLES_SIZE) {
- DISPLAYLEVEL(1, "Total samples size is too large (%u MB), maximum size is %u MB\n",
- (unsigned)(totalSamplesSize>>20), (COVER_MAX_SAMPLES_SIZE >> 20));
- return ERROR(srcSize_wrong);
- }
- /* Check if there are at least 5 training samples */
- if (nbTrainSamples < 5) {
- DISPLAYLEVEL(1, "Total number of training samples is %u and is invalid.", nbTrainSamples);
- return ERROR(srcSize_wrong);
- }
- /* Check if there's testing sample */
- if (nbTestSamples < 1) {
- DISPLAYLEVEL(1, "Total number of testing samples is %u and is invalid.", nbTestSamples);
- return ERROR(srcSize_wrong);
- }
- /* Zero the context */
- memset(ctx, 0, sizeof(*ctx));
- DISPLAYLEVEL(2, "Training on %u samples of total size %u\n", nbTrainSamples,
- (unsigned)trainingSamplesSize);
- DISPLAYLEVEL(2, "Testing on %u samples of total size %u\n", nbTestSamples,
- (unsigned)testSamplesSize);
- ctx->samples = samples;
- ctx->samplesSizes = samplesSizes;
- ctx->nbSamples = nbSamples;
- ctx->nbTrainSamples = nbTrainSamples;
- ctx->nbTestSamples = nbTestSamples;
- /* Partial suffix array */
- ctx->suffixSize = trainingSamplesSize - MAX(d, sizeof(U64)) + 1;
- ctx->suffix = (U32 *)malloc(ctx->suffixSize * sizeof(U32));
- /* Maps index to the dmerID */
- ctx->dmerAt = (U32 *)malloc(ctx->suffixSize * sizeof(U32));
- /* The offsets of each file */
- ctx->offsets = (size_t *)malloc((nbSamples + 1) * sizeof(size_t));
- if (!ctx->suffix || !ctx->dmerAt || !ctx->offsets) {
- DISPLAYLEVEL(1, "Failed to allocate scratch buffers\n");
- COVER_ctx_destroy(ctx);
- return ERROR(memory_allocation);
- }
- ctx->freqs = NULL;
- ctx->d = d;
- /* Fill offsets from the samplesSizes */
- {
- U32 i;
- ctx->offsets[0] = 0;
- for (i = 1; i <= nbSamples; ++i) {
- ctx->offsets[i] = ctx->offsets[i - 1] + samplesSizes[i - 1];
- }
- }
- DISPLAYLEVEL(2, "Constructing partial suffix array\n");
- {
- /* suffix is a partial suffix array.
- * It only sorts suffixes by their first parameters.d bytes.
- * The sort is stable, so each dmer group is sorted by position in input.
- */
- U32 i;
- for (i = 0; i < ctx->suffixSize; ++i) {
- ctx->suffix[i] = i;
- }
- /* qsort doesn't take an opaque pointer, so pass as a global.
- * On OpenBSD qsort() is not guaranteed to be stable, their mergesort() is.
- */
- g_coverCtx = ctx;
- #if defined(__OpenBSD__)
- mergesort(ctx->suffix, ctx->suffixSize, sizeof(U32),
- (ctx->d <= 8 ? &COVER_strict_cmp8 : &COVER_strict_cmp));
- #else
- qsort(ctx->suffix, ctx->suffixSize, sizeof(U32),
- (ctx->d <= 8 ? &COVER_strict_cmp8 : &COVER_strict_cmp));
- #endif
- }
- DISPLAYLEVEL(2, "Computing frequencies\n");
- /* For each dmer group (group of positions with the same first d bytes):
- * 1. For each position we set dmerAt[position] = dmerID. The dmerID is
- * (groupBeginPtr - suffix). This allows us to go from position to
- * dmerID so we can look up values in freq.
- * 2. We calculate how many samples the dmer occurs in and save it in
- * freqs[dmerId].
- */
- COVER_groupBy(ctx->suffix, ctx->suffixSize, sizeof(U32), ctx,
- (ctx->d <= 8 ? &COVER_cmp8 : &COVER_cmp), &COVER_group);
- ctx->freqs = ctx->suffix;
- ctx->suffix = NULL;
- return 0;
- }
- void COVER_warnOnSmallCorpus(size_t maxDictSize, size_t nbDmers, int displayLevel)
- {
- const double ratio = (double)nbDmers / maxDictSize;
- if (ratio >= 10) {
- return;
- }
- LOCALDISPLAYLEVEL(displayLevel, 1,
- "WARNING: The maximum dictionary size %u is too large "
- "compared to the source size %u! "
- "size(source)/size(dictionary) = %f, but it should be >= "
- "10! This may lead to a subpar dictionary! We recommend "
- "training on sources at least 10x, and preferably 100x "
- "the size of the dictionary! \n", (U32)maxDictSize,
- (U32)nbDmers, ratio);
- }
- COVER_epoch_info_t COVER_computeEpochs(U32 maxDictSize,
- U32 nbDmers, U32 k, U32 passes)
- {
- const U32 minEpochSize = k * 10;
- COVER_epoch_info_t epochs;
- epochs.num = MAX(1, maxDictSize / k / passes);
- epochs.size = nbDmers / epochs.num;
- if (epochs.size >= minEpochSize) {
- assert(epochs.size * epochs.num <= nbDmers);
- return epochs;
- }
- epochs.size = MIN(minEpochSize, nbDmers);
- epochs.num = nbDmers / epochs.size;
- assert(epochs.size * epochs.num <= nbDmers);
- return epochs;
- }
- /**
- * Given the prepared context build the dictionary.
- */
- static size_t COVER_buildDictionary(const COVER_ctx_t *ctx, U32 *freqs,
- COVER_map_t *activeDmers, void *dictBuffer,
- size_t dictBufferCapacity,
- ZDICT_cover_params_t parameters) {
- BYTE *const dict = (BYTE *)dictBuffer;
- size_t tail = dictBufferCapacity;
- /* Divide the data into epochs. We will select one segment from each epoch. */
- const COVER_epoch_info_t epochs = COVER_computeEpochs(
- (U32)dictBufferCapacity, (U32)ctx->suffixSize, parameters.k, 4);
- const size_t maxZeroScoreRun = MAX(10, MIN(100, epochs.num >> 3));
- size_t zeroScoreRun = 0;
- size_t epoch;
- DISPLAYLEVEL(2, "Breaking content into %u epochs of size %u\n",
- (U32)epochs.num, (U32)epochs.size);
- /* Loop through the epochs until there are no more segments or the dictionary
- * is full.
- */
- for (epoch = 0; tail > 0; epoch = (epoch + 1) % epochs.num) {
- const U32 epochBegin = (U32)(epoch * epochs.size);
- const U32 epochEnd = epochBegin + epochs.size;
- size_t segmentSize;
- /* Select a segment */
- COVER_segment_t segment = COVER_selectSegment(
- ctx, freqs, activeDmers, epochBegin, epochEnd, parameters);
- /* If the segment covers no dmers, then we are out of content.
- * There may be new content in other epochs, for continue for some time.
- */
- if (segment.score == 0) {
- if (++zeroScoreRun >= maxZeroScoreRun) {
- break;
- }
- continue;
- }
- zeroScoreRun = 0;
- /* Trim the segment if necessary and if it is too small then we are done */
- segmentSize = MIN(segment.end - segment.begin + parameters.d - 1, tail);
- if (segmentSize < parameters.d) {
- break;
- }
- /* We fill the dictionary from the back to allow the best segments to be
- * referenced with the smallest offsets.
- */
- tail -= segmentSize;
- memcpy(dict + tail, ctx->samples + segment.begin, segmentSize);
- DISPLAYUPDATE(
- 2, "\r%u%% ",
- (unsigned)(((dictBufferCapacity - tail) * 100) / dictBufferCapacity));
- }
- DISPLAYLEVEL(2, "\r%79s\r", "");
- return tail;
- }
- ZDICTLIB_API size_t ZDICT_trainFromBuffer_cover(
- void *dictBuffer, size_t dictBufferCapacity,
- const void *samplesBuffer, const size_t *samplesSizes, unsigned nbSamples,
- ZDICT_cover_params_t parameters)
- {
- BYTE* const dict = (BYTE*)dictBuffer;
- COVER_ctx_t ctx;
- COVER_map_t activeDmers;
- parameters.splitPoint = 1.0;
- /* Initialize global data */
- g_displayLevel = (int)parameters.zParams.notificationLevel;
- /* Checks */
- if (!COVER_checkParameters(parameters, dictBufferCapacity)) {
- DISPLAYLEVEL(1, "Cover parameters incorrect\n");
- return ERROR(parameter_outOfBound);
- }
- if (nbSamples == 0) {
- DISPLAYLEVEL(1, "Cover must have at least one input file\n");
- return ERROR(srcSize_wrong);
- }
- if (dictBufferCapacity < ZDICT_DICTSIZE_MIN) {
- DISPLAYLEVEL(1, "dictBufferCapacity must be at least %u\n",
- ZDICT_DICTSIZE_MIN);
- return ERROR(dstSize_tooSmall);
- }
- /* Initialize context and activeDmers */
- {
- size_t const initVal = COVER_ctx_init(&ctx, samplesBuffer, samplesSizes, nbSamples,
- parameters.d, parameters.splitPoint);
- if (ZSTD_isError(initVal)) {
- return initVal;
- }
- }
- COVER_warnOnSmallCorpus(dictBufferCapacity, ctx.suffixSize, g_displayLevel);
- if (!COVER_map_init(&activeDmers, parameters.k - parameters.d + 1)) {
- DISPLAYLEVEL(1, "Failed to allocate dmer map: out of memory\n");
- COVER_ctx_destroy(&ctx);
- return ERROR(memory_allocation);
- }
- DISPLAYLEVEL(2, "Building dictionary\n");
- {
- const size_t tail =
- COVER_buildDictionary(&ctx, ctx.freqs, &activeDmers, dictBuffer,
- dictBufferCapacity, parameters);
- const size_t dictionarySize = ZDICT_finalizeDictionary(
- dict, dictBufferCapacity, dict + tail, dictBufferCapacity - tail,
- samplesBuffer, samplesSizes, nbSamples, parameters.zParams);
- if (!ZSTD_isError(dictionarySize)) {
- DISPLAYLEVEL(2, "Constructed dictionary of size %u\n",
- (unsigned)dictionarySize);
- }
- COVER_ctx_destroy(&ctx);
- COVER_map_destroy(&activeDmers);
- return dictionarySize;
- }
- }
- size_t COVER_checkTotalCompressedSize(const ZDICT_cover_params_t parameters,
- const size_t *samplesSizes, const BYTE *samples,
- size_t *offsets,
- size_t nbTrainSamples, size_t nbSamples,
- BYTE *const dict, size_t dictBufferCapacity) {
- size_t totalCompressedSize = ERROR(GENERIC);
- /* Pointers */
- ZSTD_CCtx *cctx;
- ZSTD_CDict *cdict;
- void *dst;
- /* Local variables */
- size_t dstCapacity;
- size_t i;
- /* Allocate dst with enough space to compress the maximum sized sample */
- {
- size_t maxSampleSize = 0;
- i = parameters.splitPoint < 1.0 ? nbTrainSamples : 0;
- for (; i < nbSamples; ++i) {
- maxSampleSize = MAX(samplesSizes[i], maxSampleSize);
- }
- dstCapacity = ZSTD_compressBound(maxSampleSize);
- dst = malloc(dstCapacity);
- }
- /* Create the cctx and cdict */
- cctx = ZSTD_createCCtx();
- cdict = ZSTD_createCDict(dict, dictBufferCapacity,
- parameters.zParams.compressionLevel);
- if (!dst || !cctx || !cdict) {
- goto _compressCleanup;
- }
- /* Compress each sample and sum their sizes (or error) */
- totalCompressedSize = dictBufferCapacity;
- i = parameters.splitPoint < 1.0 ? nbTrainSamples : 0;
- for (; i < nbSamples; ++i) {
- const size_t size = ZSTD_compress_usingCDict(
- cctx, dst, dstCapacity, samples + offsets[i],
- samplesSizes[i], cdict);
- if (ZSTD_isError(size)) {
- totalCompressedSize = size;
- goto _compressCleanup;
- }
- totalCompressedSize += size;
- }
- _compressCleanup:
- ZSTD_freeCCtx(cctx);
- ZSTD_freeCDict(cdict);
- if (dst) {
- free(dst);
- }
- return totalCompressedSize;
- }
- /**
- * Initialize the `COVER_best_t`.
- */
- void COVER_best_init(COVER_best_t *best) {
- if (best==NULL) return; /* compatible with init on NULL */
- (void)ZSTD_pthread_mutex_init(&best->mutex, NULL);
- (void)ZSTD_pthread_cond_init(&best->cond, NULL);
- best->liveJobs = 0;
- best->dict = NULL;
- best->dictSize = 0;
- best->compressedSize = (size_t)-1;
- memset(&best->parameters, 0, sizeof(best->parameters));
- }
- /**
- * Wait until liveJobs == 0.
- */
- void COVER_best_wait(COVER_best_t *best) {
- if (!best) {
- return;
- }
- ZSTD_pthread_mutex_lock(&best->mutex);
- while (best->liveJobs != 0) {
- ZSTD_pthread_cond_wait(&best->cond, &best->mutex);
- }
- ZSTD_pthread_mutex_unlock(&best->mutex);
- }
- /**
- * Call COVER_best_wait() and then destroy the COVER_best_t.
- */
- void COVER_best_destroy(COVER_best_t *best) {
- if (!best) {
- return;
- }
- COVER_best_wait(best);
- if (best->dict) {
- free(best->dict);
- }
- ZSTD_pthread_mutex_destroy(&best->mutex);
- ZSTD_pthread_cond_destroy(&best->cond);
- }
- /**
- * Called when a thread is about to be launched.
- * Increments liveJobs.
- */
- void COVER_best_start(COVER_best_t *best) {
- if (!best) {
- return;
- }
- ZSTD_pthread_mutex_lock(&best->mutex);
- ++best->liveJobs;
- ZSTD_pthread_mutex_unlock(&best->mutex);
- }
- /**
- * Called when a thread finishes executing, both on error or success.
- * Decrements liveJobs and signals any waiting threads if liveJobs == 0.
- * If this dictionary is the best so far save it and its parameters.
- */
- void COVER_best_finish(COVER_best_t *best, ZDICT_cover_params_t parameters,
- COVER_dictSelection_t selection) {
- void* dict = selection.dictContent;
- size_t compressedSize = selection.totalCompressedSize;
- size_t dictSize = selection.dictSize;
- if (!best) {
- return;
- }
- {
- size_t liveJobs;
- ZSTD_pthread_mutex_lock(&best->mutex);
- --best->liveJobs;
- liveJobs = best->liveJobs;
- /* If the new dictionary is better */
- if (compressedSize < best->compressedSize) {
- /* Allocate space if necessary */
- if (!best->dict || best->dictSize < dictSize) {
- if (best->dict) {
- free(best->dict);
- }
- best->dict = malloc(dictSize);
- if (!best->dict) {
- best->compressedSize = ERROR(GENERIC);
- best->dictSize = 0;
- ZSTD_pthread_cond_signal(&best->cond);
- ZSTD_pthread_mutex_unlock(&best->mutex);
- return;
- }
- }
- /* Save the dictionary, parameters, and size */
- if (dict) {
- memcpy(best->dict, dict, dictSize);
- best->dictSize = dictSize;
- best->parameters = parameters;
- best->compressedSize = compressedSize;
- }
- }
- if (liveJobs == 0) {
- ZSTD_pthread_cond_broadcast(&best->cond);
- }
- ZSTD_pthread_mutex_unlock(&best->mutex);
- }
- }
- COVER_dictSelection_t COVER_dictSelectionError(size_t error) {
- COVER_dictSelection_t selection = { NULL, 0, error };
- return selection;
- }
- unsigned COVER_dictSelectionIsError(COVER_dictSelection_t selection) {
- return (ZSTD_isError(selection.totalCompressedSize) || !selection.dictContent);
- }
- void COVER_dictSelectionFree(COVER_dictSelection_t selection){
- free(selection.dictContent);
- }
- COVER_dictSelection_t COVER_selectDict(BYTE* customDictContent, size_t dictBufferCapacity,
- size_t dictContentSize, const BYTE* samplesBuffer, const size_t* samplesSizes, unsigned nbFinalizeSamples,
- size_t nbCheckSamples, size_t nbSamples, ZDICT_cover_params_t params, size_t* offsets, size_t totalCompressedSize) {
- size_t largestDict = 0;
- size_t largestCompressed = 0;
- BYTE* customDictContentEnd = customDictContent + dictContentSize;
- BYTE * largestDictbuffer = (BYTE *)malloc(dictBufferCapacity);
- BYTE * candidateDictBuffer = (BYTE *)malloc(dictBufferCapacity);
- double regressionTolerance = ((double)params.shrinkDictMaxRegression / 100.0) + 1.00;
- if (!largestDictbuffer || !candidateDictBuffer) {
- free(largestDictbuffer);
- free(candidateDictBuffer);
- return COVER_dictSelectionError(dictContentSize);
- }
- /* Initial dictionary size and compressed size */
- memcpy(largestDictbuffer, customDictContent, dictContentSize);
- dictContentSize = ZDICT_finalizeDictionary(
- largestDictbuffer, dictBufferCapacity, customDictContent, dictContentSize,
- samplesBuffer, samplesSizes, nbFinalizeSamples, params.zParams);
- if (ZDICT_isError(dictContentSize)) {
- free(largestDictbuffer);
- free(candidateDictBuffer);
- return COVER_dictSelectionError(dictContentSize);
- }
- totalCompressedSize = COVER_checkTotalCompressedSize(params, samplesSizes,
- samplesBuffer, offsets,
- nbCheckSamples, nbSamples,
- largestDictbuffer, dictContentSize);
- if (ZSTD_isError(totalCompressedSize)) {
- free(largestDictbuffer);
- free(candidateDictBuffer);
- return COVER_dictSelectionError(totalCompressedSize);
- }
- if (params.shrinkDict == 0) {
- COVER_dictSelection_t selection = { largestDictbuffer, dictContentSize, totalCompressedSize };
- free(candidateDictBuffer);
- return selection;
- }
- largestDict = dictContentSize;
- largestCompressed = totalCompressedSize;
- dictContentSize = ZDICT_DICTSIZE_MIN;
- /* Largest dict is initially at least ZDICT_DICTSIZE_MIN */
- while (dictContentSize < largestDict) {
- memcpy(candidateDictBuffer, largestDictbuffer, largestDict);
- dictContentSize = ZDICT_finalizeDictionary(
- candidateDictBuffer, dictBufferCapacity, customDictContentEnd - dictContentSize, dictContentSize,
- samplesBuffer, samplesSizes, nbFinalizeSamples, params.zParams);
- if (ZDICT_isError(dictContentSize)) {
- free(largestDictbuffer);
- free(candidateDictBuffer);
- return COVER_dictSelectionError(dictContentSize);
- }
- totalCompressedSize = COVER_checkTotalCompressedSize(params, samplesSizes,
- samplesBuffer, offsets,
- nbCheckSamples, nbSamples,
- candidateDictBuffer, dictContentSize);
- if (ZSTD_isError(totalCompressedSize)) {
- free(largestDictbuffer);
- free(candidateDictBuffer);
- return COVER_dictSelectionError(totalCompressedSize);
- }
- if (totalCompressedSize <= largestCompressed * regressionTolerance) {
- COVER_dictSelection_t selection = { candidateDictBuffer, dictContentSize, totalCompressedSize };
- free(largestDictbuffer);
- return selection;
- }
- dictContentSize *= 2;
- }
- dictContentSize = largestDict;
- totalCompressedSize = largestCompressed;
- {
- COVER_dictSelection_t selection = { largestDictbuffer, dictContentSize, totalCompressedSize };
- free(candidateDictBuffer);
- return selection;
- }
- }
- /**
- * Parameters for COVER_tryParameters().
- */
- typedef struct COVER_tryParameters_data_s {
- const COVER_ctx_t *ctx;
- COVER_best_t *best;
- size_t dictBufferCapacity;
- ZDICT_cover_params_t parameters;
- } COVER_tryParameters_data_t;
- /**
- * Tries a set of parameters and updates the COVER_best_t with the results.
- * This function is thread safe if zstd is compiled with multithreaded support.
- * It takes its parameters as an *OWNING* opaque pointer to support threading.
- */
- static void COVER_tryParameters(void *opaque)
- {
- /* Save parameters as local variables */
- COVER_tryParameters_data_t *const data = (COVER_tryParameters_data_t*)opaque;
- const COVER_ctx_t *const ctx = data->ctx;
- const ZDICT_cover_params_t parameters = data->parameters;
- size_t dictBufferCapacity = data->dictBufferCapacity;
- size_t totalCompressedSize = ERROR(GENERIC);
- /* Allocate space for hash table, dict, and freqs */
- COVER_map_t activeDmers;
- BYTE* const dict = (BYTE*)malloc(dictBufferCapacity);
- COVER_dictSelection_t selection = COVER_dictSelectionError(ERROR(GENERIC));
- U32* const freqs = (U32*)malloc(ctx->suffixSize * sizeof(U32));
- if (!COVER_map_init(&activeDmers, parameters.k - parameters.d + 1)) {
- DISPLAYLEVEL(1, "Failed to allocate dmer map: out of memory\n");
- goto _cleanup;
- }
- if (!dict || !freqs) {
- DISPLAYLEVEL(1, "Failed to allocate buffers: out of memory\n");
- goto _cleanup;
- }
- /* Copy the frequencies because we need to modify them */
- memcpy(freqs, ctx->freqs, ctx->suffixSize * sizeof(U32));
- /* Build the dictionary */
- {
- const size_t tail = COVER_buildDictionary(ctx, freqs, &activeDmers, dict,
- dictBufferCapacity, parameters);
- selection = COVER_selectDict(dict + tail, dictBufferCapacity, dictBufferCapacity - tail,
- ctx->samples, ctx->samplesSizes, (unsigned)ctx->nbTrainSamples, ctx->nbTrainSamples, ctx->nbSamples, parameters, ctx->offsets,
- totalCompressedSize);
- if (COVER_dictSelectionIsError(selection)) {
- DISPLAYLEVEL(1, "Failed to select dictionary\n");
- goto _cleanup;
- }
- }
- _cleanup:
- free(dict);
- COVER_best_finish(data->best, parameters, selection);
- free(data);
- COVER_map_destroy(&activeDmers);
- COVER_dictSelectionFree(selection);
- free(freqs);
- }
- ZDICTLIB_API size_t ZDICT_optimizeTrainFromBuffer_cover(
- void* dictBuffer, size_t dictBufferCapacity, const void* samplesBuffer,
- const size_t* samplesSizes, unsigned nbSamples,
- ZDICT_cover_params_t* parameters)
- {
- /* constants */
- const unsigned nbThreads = parameters->nbThreads;
- const double splitPoint =
- parameters->splitPoint <= 0.0 ? COVER_DEFAULT_SPLITPOINT : parameters->splitPoint;
- const unsigned kMinD = parameters->d == 0 ? 6 : parameters->d;
- const unsigned kMaxD = parameters->d == 0 ? 8 : parameters->d;
- const unsigned kMinK = parameters->k == 0 ? 50 : parameters->k;
- const unsigned kMaxK = parameters->k == 0 ? 2000 : parameters->k;
- const unsigned kSteps = parameters->steps == 0 ? 40 : parameters->steps;
- const unsigned kStepSize = MAX((kMaxK - kMinK) / kSteps, 1);
- const unsigned kIterations =
- (1 + (kMaxD - kMinD) / 2) * (1 + (kMaxK - kMinK) / kStepSize);
- const unsigned shrinkDict = 0;
- /* Local variables */
- const int displayLevel = parameters->zParams.notificationLevel;
- unsigned iteration = 1;
- unsigned d;
- unsigned k;
- COVER_best_t best;
- POOL_ctx *pool = NULL;
- int warned = 0;
- /* Checks */
- if (splitPoint <= 0 || splitPoint > 1) {
- LOCALDISPLAYLEVEL(displayLevel, 1, "Incorrect parameters\n");
- return ERROR(parameter_outOfBound);
- }
- if (kMinK < kMaxD || kMaxK < kMinK) {
- LOCALDISPLAYLEVEL(displayLevel, 1, "Incorrect parameters\n");
- return ERROR(parameter_outOfBound);
- }
- if (nbSamples == 0) {
- DISPLAYLEVEL(1, "Cover must have at least one input file\n");
- return ERROR(srcSize_wrong);
- }
- if (dictBufferCapacity < ZDICT_DICTSIZE_MIN) {
- DISPLAYLEVEL(1, "dictBufferCapacity must be at least %u\n",
- ZDICT_DICTSIZE_MIN);
- return ERROR(dstSize_tooSmall);
- }
- if (nbThreads > 1) {
- pool = POOL_create(nbThreads, 1);
- if (!pool) {
- return ERROR(memory_allocation);
- }
- }
- /* Initialization */
- COVER_best_init(&best);
- /* Turn down global display level to clean up display at level 2 and below */
- g_displayLevel = displayLevel == 0 ? 0 : displayLevel - 1;
- /* Loop through d first because each new value needs a new context */
- LOCALDISPLAYLEVEL(displayLevel, 2, "Trying %u different sets of parameters\n",
- kIterations);
- for (d = kMinD; d <= kMaxD; d += 2) {
- /* Initialize the context for this value of d */
- COVER_ctx_t ctx;
- LOCALDISPLAYLEVEL(displayLevel, 3, "d=%u\n", d);
- {
- const size_t initVal = COVER_ctx_init(&ctx, samplesBuffer, samplesSizes, nbSamples, d, splitPoint);
- if (ZSTD_isError(initVal)) {
- LOCALDISPLAYLEVEL(displayLevel, 1, "Failed to initialize context\n");
- COVER_best_destroy(&best);
- POOL_free(pool);
- return initVal;
- }
- }
- if (!warned) {
- COVER_warnOnSmallCorpus(dictBufferCapacity, ctx.suffixSize, displayLevel);
- warned = 1;
- }
- /* Loop through k reusing the same context */
- for (k = kMinK; k <= kMaxK; k += kStepSize) {
- /* Prepare the arguments */
- COVER_tryParameters_data_t *data = (COVER_tryParameters_data_t *)malloc(
- sizeof(COVER_tryParameters_data_t));
- LOCALDISPLAYLEVEL(displayLevel, 3, "k=%u\n", k);
- if (!data) {
- LOCALDISPLAYLEVEL(displayLevel, 1, "Failed to allocate parameters\n");
- COVER_best_destroy(&best);
- COVER_ctx_destroy(&ctx);
- POOL_free(pool);
- return ERROR(memory_allocation);
- }
- data->ctx = &ctx;
- data->best = &best;
- data->dictBufferCapacity = dictBufferCapacity;
- data->parameters = *parameters;
- data->parameters.k = k;
- data->parameters.d = d;
- data->parameters.splitPoint = splitPoint;
- data->parameters.steps = kSteps;
- data->parameters.shrinkDict = shrinkDict;
- data->parameters.zParams.notificationLevel = g_displayLevel;
- /* Check the parameters */
- if (!COVER_checkParameters(data->parameters, dictBufferCapacity)) {
- DISPLAYLEVEL(1, "Cover parameters incorrect\n");
- free(data);
- continue;
- }
- /* Call the function and pass ownership of data to it */
- COVER_best_start(&best);
- if (pool) {
- POOL_add(pool, &COVER_tryParameters, data);
- } else {
- COVER_tryParameters(data);
- }
- /* Print status */
- LOCALDISPLAYUPDATE(displayLevel, 2, "\r%u%% ",
- (unsigned)((iteration * 100) / kIterations));
- ++iteration;
- }
- COVER_best_wait(&best);
- COVER_ctx_destroy(&ctx);
- }
- LOCALDISPLAYLEVEL(displayLevel, 2, "\r%79s\r", "");
- /* Fill the output buffer and parameters with output of the best parameters */
- {
- const size_t dictSize = best.dictSize;
- if (ZSTD_isError(best.compressedSize)) {
- const size_t compressedSize = best.compressedSize;
- COVER_best_destroy(&best);
- POOL_free(pool);
- return compressedSize;
- }
- *parameters = best.parameters;
- memcpy(dictBuffer, best.dict, dictSize);
- COVER_best_destroy(&best);
- POOL_free(pool);
- return dictSize;
- }
- }
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