Use AM_CPPFLAGS instead of INCLUDES in Makefile.am files, as the later is no longer supported, see http://lists.gnu.org/archive/html/automake/2012-08/msg00087.html.

eglib/src/Makefile.am

@@ -59,7 +59,7 @@ libeglib_la_CFLAGS = -g -Wall -D_FORTIFY_SOURCE=2
 libeglib_static_la_SOURCES=$(libeglib_la_SOURCES)
 libeglib_static_la_CFLAGS = $(libeglib_la_CFLAGS)
 
-INCLUDES = -I$(srcdir)
+AM_CPPFLAGS = -I$(srcdir)
 
 if HOST_WIN32
 libeglib_la_LIBADD = -lm $(LIBICONV) -lpsapi

ikvm-native/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GMODULE_CFLAGS)
+AM_CPPFLAGS = $(GMODULE_CFLAGS)
 
 lib_LTLIBRARIES = libikvm-native.la
 

libgc/Makefile.am

@@ -22,7 +22,7 @@ ACLOCAL_AMFLAGS = -I m4
 
 SUBDIRS = m4 include doc
 
-INCLUDES = -I$(top_builddir)/.. -I$(top_srcdir)/..
+AM_CPPFLAGS = -I$(top_builddir)/.. -I$(top_srcdir)/..
 
 #
 # libtool is not capable of creating shared/static versions of a convenience
@@ -115,7 +115,7 @@ endif
 
 ## We have our own definition of LTCOMPILE because we want to use our
 ## CFLAGS, not those passed in from the top level make.
-LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(INCLUDES) \
+LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) \
 	-I$(top_srcdir)/include $(AM_CPPFLAGS) $(CPPFLAGS) \
 	$(AM_CFLAGS) $(MY_CFLAGS) $(GC_CFLAGS) 
 LINK = $(LIBTOOL) --mode=link $(CC) $(AM_CFLAGS) $(MY_CFLAGS) $(LDFLAGS) -o $@

libgc/configure.in

@@ -75,7 +75,7 @@ AC_ARG_ENABLE(cplusplus,
 [  --enable-cplusplus		install C++ support],
 )
 
-INCLUDES=-I${srcdir}/include
+AM_CPPFLAGS=-I${srcdir}/include
 THREADDLLIBS=
 ## Libraries needed to support dynamic loading and/or threads.
 case "$THREADS" in
@@ -115,7 +115,7 @@ case "$THREADS" in
       *-*-freebsd*)
 	AC_DEFINE(GC_FREEBSD_THREADS)
 	if test "x$PTHREAD_CFLAGS" != "x"; then
-		INCLUDES="$INCLUDES $PTHREAD_CFLAGS"
+		AM_CPPFLAGS="$AM_CPPFLAGS $PTHREAD_CFLAGS"
 	fi
 	if test "x$PTHREAD_LIBS" = "x"; then
 		THREADDLLIBS=-pthread
@@ -163,7 +163,7 @@ case "$THREADS" in
 	  # May want to enable it in other cases, too.
 	  # Measurements havent yet been done.
 	fi
-	INCLUDES="$INCLUDES -pthread"
+	AM_CPPFLAGS="$AM_CPPFLAGS -pthread"
 	THREADDLLIBS="-lpthread -lrt"
 	;;
       *)
@@ -191,7 +191,7 @@ case "$THREADS" in
     AC_DEFINE(GC_DGUX386_THREADS)
     AC_DEFINE(DGUX_THREADS)
     # Enable _POSIX4A_DRAFT10_SOURCE with flag -pthread
-    INCLUDES="-pthread $INCLUDES"
+    AM_CPPFLAGS="-pthread $AM_CPPFLAGS"
     ;;
  aix)
     THREADS=posix
@@ -256,7 +256,7 @@ addobjs=
 addlibs=
 addincludes=
 addtests=
-CXXINCLUDES=
+CXXAM_CPPFLAGS=
 case "$TARGET_ECOS" in
    no)
       ;;
@@ -276,7 +276,7 @@ AM_CONDITIONAL(CPLUSPLUS, test "${enable_cplusplus}" = yes)
 
 AC_SUBST(CXX)
 
-AC_SUBST(INCLUDES)
+AC_SUBST(AM_CPPFLAGS)
 AC_SUBST(CXXINCLUDES)
 
 # Configuration of shared libraries

mono/arch/Makefile.am

@@ -1,6 +1,6 @@
 DIST_SUBDIRS = x86 ppc sparc arm s390 s390x alpha hppa amd64 ia64 mips
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 if INTERP_SUPPORTED
 SUBDIRS = $(arch_target)

mono/arch/alpha/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-alpha.la
 

mono/arch/amd64/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-amd64.la
 

mono/arch/arm/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-arm.la
 

mono/arch/hppa/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-hppa.la
 

mono/arch/mips/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-mips.la
 

mono/arch/ppc/Makefile.am

@@ -1,6 +1,6 @@
 if INTERP_SUPPORTED
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-ppc.la
 

mono/arch/s390/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-s390.la
 

mono/arch/s390x/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-s390x.la
 

mono/arch/sparc/Makefile.am

@@ -1,5 +1,5 @@
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-sparc.la
 

mono/arch/x86/Makefile.am

@@ -1,6 +1,6 @@
 if INTERP_SUPPORTED
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 noinst_LTLIBRARIES = libmonoarch-x86.la
 

mono/dis/Makefile.am

@@ -1,4 +1,4 @@
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 if HOST_WIN32
 export HOST_CC

mono/interpreter/Makefile.am

@@ -1,4 +1,4 @@
-INCLUDES = 				\
+AM_CPPFLAGS = 				\
 	-I$(top_srcdir)			\
 	$(LIBGC_CPPFLAGS)		\
 	$(GLIB_CFLAGS)

mono/io-layer/Makefile.am

@@ -1,7 +1,7 @@
 
 noinst_LTLIBRARIES = libwapi.la
 
-INCLUDES = \
+AM_CPPFLAGS = \
 	$(GLIB_CFLAGS)		\
 	$(LIBGC_CPPFLAGS)	\
 	-DMONO_BINDIR=\""$(bindir)"\"	\

mono/metadata/Makefile.am

@@ -66,7 +66,7 @@ else
 noinst_LTLIBRARIES = $(boehm_libraries) $(sgen_libraries) $(moonlight_libraries)
 endif
 
-INCLUDES = -I$(top_srcdir) -I$(top_srcdir)/mono $(LIBGC_CPPFLAGS) $(GLIB_CFLAGS) -DMONO_BINDIR=\"$(bindir)/\" -DMONO_ASSEMBLIES=\"$(assembliesdir)\" -DMONO_CFG_DIR=\"$(confdir)\"
+AM_CPPFLAGS = -I$(top_srcdir) -I$(top_srcdir)/mono $(LIBGC_CPPFLAGS) $(GLIB_CFLAGS) -DMONO_BINDIR=\"$(bindir)/\" -DMONO_ASSEMBLIES=\"$(assembliesdir)\" -DMONO_CFG_DIR=\"$(confdir)\"
 
 #
 # Make sure any prefix changes are updated in the binaries too.

mono/mini/Makefile.am

@@ -150,7 +150,7 @@ mono_SOURCES = \
 
 mono_CFLAGS = $(AM_CFLAGS)
 
-INCLUDES = $(LIBGC_CPPFLAGS)
+AM_CPPFLAGS = $(LIBGC_CPPFLAGS)
 
 mono_sgen_SOURCES = $(mono_SOURCES)
 mono_sgen_CFLAGS = $(AM_CFLAGS)

mono/monograph/Makefile.am

@@ -22,7 +22,7 @@ endif
 
 bin_PROGRAMS = monograph
 
-INCLUDES = 				\
+AM_CPPFLAGS = 				\
 	-I$(top_srcdir)			\
 	$(GLIB_CFLAGS)
 

mono/profiler/Makefile.am

@@ -4,7 +4,7 @@ else
 Z_LIBS=
 endif
 
-INCLUDES = \
+AM_CPPFLAGS = \
 	-fexceptions -DMONO_USE_EXC_TABLES	\
 	-I$(top_srcdir) 	\
 	$(GLIB_CFLAGS)

mono/tests/Makefile.am

@@ -1035,7 +1035,7 @@ test-oom: $(OOM_TESTS)
 
 noinst_LTLIBRARIES = libtest.la
 
-INCLUDES = $(GLIB_CFLAGS) $(GMODULE_CFLAGS)
+AM_CPPFLAGS = $(GLIB_CFLAGS) $(GMODULE_CFLAGS)
 
 if HOST_WIN32
 # gcc-3.4.4 emits incorrect code when making indirect calls to stdcall functions using a tail call

mono/utils/Makefile.am

@@ -1,6 +1,6 @@
 noinst_LTLIBRARIES = libmonoutils.la
 
-INCLUDES = -I$(top_srcdir) -I$(top_srcdir)/mono $(LIBGC_CPPFLAGS) $(GLIB_CFLAGS)
+AM_CPPFLAGS = -I$(top_srcdir) -I$(top_srcdir)/mono $(LIBGC_CPPFLAGS) $(GLIB_CFLAGS)
 
 if ENABLE_DTRACE
 

mono/wrapper/Makefile.am

@@ -1,6 +1,6 @@
 lib_LTLIBRARIES = libmonowrapper.la
 
-INCLUDES = $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS = $(GLIB_CFLAGS) -I$(top_srcdir)
 
 if HOST_WIN32
 # glob.c doesnt build under windows

po/Makefile.am

@@ -1 +1 @@
-SUBDIRS = mcs
+SUBDIRS = mcs

samples/Makefile.am

@@ -8,4 +8,4 @@ dist-hook:
 	cp $(srcdir)/embed/test-metadata.c $(distdir)/embed
 	cp $(srcdir)/embed/test-invoke.c $(srcdir)/embed/invoke.cs $(distdir)/embed
 	cp $(srcdir)/size/sample.cs $(srcdir)/size/objectinspector.cs $(distdir)/size
-	cp $(srcdir)/size/size.c $(srcdir)/size/Makefile $(srcdir)/size/README $(distdir)/size
+	cp $(srcdir)/size/size.c $(srcdir)/size/Makefile $(srcdir)/size/README $(distdir)/size

support/Makefile.am

@@ -7,7 +7,7 @@ lib_LTLIBRARIES = 				\
 	libMonoPosixHelper.la			\
 	$(SUPPORT)
 
-INCLUDES =					\
+AM_CPPFLAGS =					\
 	$(GLIB_CFLAGS)				\
 	-I$(top_srcdir)
 

tools/sgen/Makefile.am

@@ -1,6 +1,6 @@
 bin_PROGRAMS = sgen-grep-binprot
 
-INCLUDES =  $(GLIB_CFLAGS) -I$(top_srcdir)
+AM_CPPFLAGS =  $(GLIB_CFLAGS) -I$(top_srcdir)
 
 sgen_grep_binprot_SOURCES = \
 	sgen-grep-binprot.c