css3d_molecules.html 11 KB

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  1. <!DOCTYPE html>
  2. <html>
  3. <head>
  4. <title>three.js css3d - molecules</title>
  5. <meta charset="utf-8">
  6. <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
  7. <style>
  8. html, body {
  9. height: 100%;
  10. }
  11. body {
  12. background-color: #050505;
  13. background: radial-gradient(ellipse at center, rgba(43,45,48,1) 0%,rgba(0,0,0,1) 100%);
  14. margin: 0;
  15. font-family: Arial;
  16. overflow: hidden;
  17. }
  18. a {
  19. color: #ffffff;
  20. }
  21. #info {
  22. position: absolute;
  23. top: 0px;
  24. width: 100%;
  25. color: #ffffff;
  26. padding: 5px;
  27. font-family: Monospace;
  28. font-size: 13px;
  29. font-weight: bold;
  30. text-align: center;
  31. z-index: 1;
  32. }
  33. #menu {
  34. position: absolute;
  35. bottom: 20px;
  36. width: 100%;
  37. text-align: center;
  38. padding: 0;
  39. margin: 0;
  40. }
  41. #topmenu {
  42. position: absolute;
  43. top: 10px;
  44. right: 10px;
  45. width: 100%;
  46. text-align: right;
  47. padding: 0;
  48. margin: 0;
  49. z-index: 1;
  50. }
  51. button {
  52. color: rgb(255,255,255);
  53. background: transparent;
  54. border: 0px;
  55. padding: 5px 10px;
  56. cursor: pointer;
  57. }
  58. button:hover {
  59. background-color: rgba(0,255,255,0.5);
  60. }
  61. button:active {
  62. color: #000000;
  63. background-color: rgba(0,255,255,1);
  64. }
  65. .bond {
  66. width: 5px;
  67. height: 10px;
  68. background: #eee;
  69. display: block;
  70. }
  71. </style>
  72. </head>
  73. <body>
  74. <script src="../build/three.js"></script>
  75. <script src="js/controls/TrackballControls.js"></script>
  76. <script src="js/renderers/CSS3DRenderer.js"></script>
  77. <script src="js/loaders/PDBLoader.js"></script>
  78. <div id="container"></div>
  79. <div id="info"><a href="http://threejs.org" target="_blank" rel="noopener">three.js css3d</a> - molecules</div>
  80. <div id="topmenu">
  81. <button id="b_a">Atoms</button>
  82. <button id="b_b">Bonds</button>
  83. <button id="b_ab">Atoms + Bonds</button>
  84. </div>
  85. <div id="menu"></div>
  86. <script>
  87. var camera, scene, renderer;
  88. var controls;
  89. var root;
  90. var objects = [];
  91. var tmpVec1 = new THREE.Vector3();
  92. var tmpVec2 = new THREE.Vector3();
  93. var tmpVec3 = new THREE.Vector3();
  94. var tmpVec4 = new THREE.Vector3();
  95. var offset = new THREE.Vector3();
  96. var visualizationType = 2;
  97. var MOLECULES = {
  98. "Ethanol": "ethanol.pdb",
  99. "Aspirin": "aspirin.pdb",
  100. "Caffeine": "caffeine.pdb",
  101. "Nicotine": "nicotine.pdb",
  102. "LSD": "lsd.pdb",
  103. "Cocaine": "cocaine.pdb",
  104. "Cholesterol": "cholesterol.pdb",
  105. "Lycopene": "lycopene.pdb",
  106. "Glucose": "glucose.pdb",
  107. "Aluminium oxide": "Al2O3.pdb",
  108. "Cubane": "cubane.pdb",
  109. "Copper": "cu.pdb",
  110. "Fluorite": "caf2.pdb",
  111. "Salt": "nacl.pdb",
  112. "YBCO superconductor": "ybco.pdb",
  113. "Buckyball": "buckyball.pdb",
  114. //"Diamond": "diamond.pdb",
  115. "Graphite": "graphite.pdb"
  116. };
  117. var loader = new THREE.PDBLoader();
  118. var colorSpriteMap = {};
  119. var baseSprite = document.createElement( 'img' );
  120. var menu = document.getElementById( "menu" );
  121. init();
  122. animate();
  123. function init() {
  124. camera = new THREE.PerspectiveCamera( 70, window.innerWidth / window.innerHeight, 1, 5000 );
  125. camera.position.z = 1500;
  126. scene = new THREE.Scene();
  127. root = new THREE.Object3D();
  128. scene.add( root );
  129. //
  130. renderer = new THREE.CSS3DRenderer();
  131. renderer.setSize( window.innerWidth, window.innerHeight );
  132. document.getElementById( 'container' ).appendChild( renderer.domElement );
  133. //
  134. controls = new THREE.TrackballControls( camera, renderer.domElement );
  135. controls.rotateSpeed = 0.5;
  136. controls.addEventListener( 'change', render );
  137. //
  138. baseSprite.onload = function () {
  139. loadMolecule( "models/molecules/caffeine.pdb" );
  140. createMenu();
  141. };
  142. baseSprite.src = 'textures/sprites/ball.png';
  143. //
  144. window.addEventListener( 'resize', onWindowResize, false );
  145. }
  146. //
  147. function generateButtonCallback( url ) {
  148. return function () {
  149. loadMolecule( url );
  150. };
  151. }
  152. function createMenu() {
  153. for ( var m in MOLECULES ) {
  154. var button = document.createElement( 'button' );
  155. button.innerHTML = m;
  156. menu.appendChild( button );
  157. var url = "models/molecules/" + MOLECULES[ m ];
  158. button.addEventListener( 'click', generateButtonCallback( url ), false );
  159. }
  160. var b_a = document.getElementById( "b_a" );
  161. var b_b = document.getElementById( "b_b" );
  162. var b_ab = document.getElementById( "b_ab" );
  163. b_a.addEventListener( 'click', function () {
  164. visualizationType = 0;
  165. showAtoms();
  166. } );
  167. b_b.addEventListener( 'click', function () {
  168. visualizationType = 1;
  169. showBonds();
  170. } );
  171. b_ab.addEventListener( 'click', function () {
  172. visualizationType = 2;
  173. showAtomsBonds();
  174. } );
  175. }
  176. //
  177. function showAtoms() {
  178. for ( var i = 0; i < objects.length; i ++ ) {
  179. var object = objects[ i ];
  180. if ( object instanceof THREE.CSS3DSprite ) {
  181. object.element.style.display = "";
  182. object.visible = true;
  183. } else {
  184. object.element.style.display = "none";
  185. object.visible = false;
  186. }
  187. }
  188. }
  189. function showBonds() {
  190. for ( var i = 0; i < objects.length; i ++ ) {
  191. var object = objects[ i ];
  192. if ( object instanceof THREE.CSS3DSprite ) {
  193. object.element.style.display = "none";
  194. object.visible = false;
  195. } else {
  196. object.element.style.display = "";
  197. object.element.style.height = object.userData.bondLengthFull;
  198. object.visible = true;
  199. }
  200. }
  201. }
  202. function showAtomsBonds() {
  203. for ( var i = 0; i < objects.length; i ++ ) {
  204. var object = objects[ i ];
  205. object.element.style.display = "";
  206. object.visible = true;
  207. if ( ! ( object instanceof THREE.CSS3DSprite ) ) {
  208. object.element.style.height = object.userData.bondLengthShort;
  209. }
  210. }
  211. }
  212. //
  213. function colorify( ctx, width, height, color ) {
  214. var r = color.r, g = color.g, b = color.b;
  215. var imageData = ctx.getImageData( 0, 0, width, height );
  216. var data = imageData.data;
  217. for ( var i = 0, l = data.length; i < l; i += 4 ) {
  218. data[ i + 0 ] *= r;
  219. data[ i + 1 ] *= g;
  220. data[ i + 2 ] *= b;
  221. }
  222. ctx.putImageData( imageData, 0, 0 );
  223. }
  224. function imageToCanvas( image ) {
  225. var width = image.width;
  226. var height = image.height;
  227. var canvas = document.createElement( 'canvas' );
  228. canvas.width = width;
  229. canvas.height = height;
  230. var context = canvas.getContext( '2d' );
  231. context.drawImage( image, 0, 0, width, height );
  232. return canvas;
  233. }
  234. //
  235. function loadMolecule( url ) {
  236. for ( var i = 0; i < objects.length; i ++ ) {
  237. var object = objects[ i ];
  238. object.parent.remove( object );
  239. }
  240. objects = [];
  241. loader.load( url, function ( pdb ) {
  242. var geometryAtoms = pdb.geometryAtoms;
  243. var geometryBonds = pdb.geometryBonds;
  244. var json = pdb.json;
  245. geometryAtoms.computeBoundingBox();
  246. geometryAtoms.boundingBox.getCenter( offset ).negate();
  247. geometryAtoms.translate( offset.x, offset.y, offset.z );
  248. geometryBonds.translate( offset.x, offset.y, offset.z );
  249. var positions = geometryAtoms.getAttribute( 'position' );
  250. var colors = geometryAtoms.getAttribute( 'color' );
  251. var position = new THREE.Vector3();
  252. var color = new THREE.Color();
  253. for ( var i = 0; i < positions.count; i ++ ) {
  254. position.x = positions.getX( i );
  255. position.y = positions.getY( i );
  256. position.z = positions.getZ( i );
  257. color.r = colors.getX( i );
  258. color.g = colors.getY( i );
  259. color.b = colors.getZ( i );
  260. var atom = json.atoms[ i ];
  261. var element = atom[ 4 ];
  262. if ( ! colorSpriteMap[ element ] ) {
  263. var canvas = imageToCanvas( baseSprite );
  264. var context = canvas.getContext( '2d' );
  265. colorify( context, canvas.width, canvas.height, color );
  266. var dataUrl = canvas.toDataURL();
  267. colorSpriteMap[ element ] = dataUrl;
  268. }
  269. var colorSprite = colorSpriteMap[ element ];
  270. var atom = document.createElement( 'img' );
  271. atom.src = colorSprite;
  272. var object = new THREE.CSS3DSprite( atom );
  273. object.position.copy( position );
  274. object.position.multiplyScalar( 75 );
  275. object.matrixAutoUpdate = false;
  276. object.updateMatrix();
  277. root.add( object );
  278. objects.push( object );
  279. }
  280. positions = geometryBonds.getAttribute( 'position' );
  281. var start = new THREE.Vector3();
  282. var end = new THREE.Vector3();
  283. for ( var i = 0; i < positions.count; i += 2 ) {
  284. start.x = positions.getX( i );
  285. start.y = positions.getY( i );
  286. start.z = positions.getZ( i );
  287. end.x = positions.getX( i + 1 );
  288. end.y = positions.getY( i + 1 );
  289. end.z = positions.getZ( i + 1 );
  290. start.multiplyScalar( 75 );
  291. end.multiplyScalar( 75 );
  292. tmpVec1.subVectors( end, start );
  293. var bondLength = tmpVec1.length() - 50;
  294. //
  295. var bond = document.createElement( 'div' );
  296. bond.className = "bond";
  297. bond.style.height = bondLength + "px";
  298. var object = new THREE.CSS3DObject( bond );
  299. object.position.copy( start );
  300. object.position.lerp( end, 0.5 );
  301. object.userData.bondLengthShort = bondLength + "px";
  302. object.userData.bondLengthFull = ( bondLength + 55 ) + "px";
  303. //
  304. var axis = tmpVec2.set( 0, 1, 0 ).cross( tmpVec1 );
  305. var radians = Math.acos( tmpVec3.set( 0, 1, 0 ).dot( tmpVec4.copy( tmpVec1 ).normalize() ) );
  306. var objMatrix = new THREE.Matrix4().makeRotationAxis( axis.normalize(), radians );
  307. object.matrix = objMatrix;
  308. object.rotation.setFromRotationMatrix( object.matrix, object.rotation.order );
  309. object.matrixAutoUpdate = false;
  310. object.updateMatrix();
  311. root.add( object );
  312. objects.push( object );
  313. //
  314. var bond = document.createElement( 'div' );
  315. bond.className = "bond";
  316. bond.style.height = bondLength + "px";
  317. var joint = new THREE.Object3D( bond );
  318. joint.position.copy( start );
  319. joint.position.lerp( end, 0.5 );
  320. joint.matrix.copy( objMatrix );
  321. joint.rotation.setFromRotationMatrix( joint.matrix, joint.rotation.order );
  322. joint.matrixAutoUpdate = false;
  323. joint.updateMatrix();
  324. var object = new THREE.CSS3DObject( bond );
  325. object.rotation.y = Math.PI / 2;
  326. object.matrixAutoUpdate = false;
  327. object.updateMatrix();
  328. object.userData.bondLengthShort = bondLength + "px";
  329. object.userData.bondLengthFull = ( bondLength + 55 ) + "px";
  330. object.userData.joint = joint;
  331. joint.add( object );
  332. root.add( joint );
  333. objects.push( object );
  334. }
  335. //console.log( "CSS3DObjects:", objects.length );
  336. switch ( visualizationType ) {
  337. case 0:
  338. showAtoms();
  339. break;
  340. case 1:
  341. showBonds();
  342. break;
  343. case 2:
  344. showAtomsBonds();
  345. break;
  346. }
  347. render();
  348. } );
  349. }
  350. //
  351. function onWindowResize() {
  352. camera.aspect = window.innerWidth / window.innerHeight;
  353. camera.updateProjectionMatrix();
  354. renderer.setSize( window.innerWidth, window.innerHeight );
  355. render();
  356. }
  357. function animate() {
  358. requestAnimationFrame( animate );
  359. controls.update();
  360. var time = Date.now() * 0.0004;
  361. root.rotation.x = time;
  362. root.rotation.y = time * 0.7;
  363. render();
  364. }
  365. function render() {
  366. renderer.render( scene, camera );
  367. }
  368. </script>
  369. </body>
  370. </html>