Changed defaults, as it seems to be obviousy better to keep materials outside by default..

editor/import/resource_importer_scene.cpp

@@ -933,13 +933,13 @@ void ResourceImporterScene::get_import_options(List<ImportOption> *r_options, in
 
 	r_options->push_back(ImportOption(PropertyInfo(Variant::STRING, "nodes/custom_script", PROPERTY_HINT_FILE, script_ext_hint), ""));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::INT, "nodes/storage", PROPERTY_HINT_ENUM, "Single Scene,Instanced Sub-Scenes"), scenes_out ? 1 : 0));
-	r_options->push_back(ImportOption(PropertyInfo(Variant::INT, "materials/location", PROPERTY_HINT_ENUM, "Node,Mesh"), meshes_out ? 1 : 0));
+	r_options->push_back(ImportOption(PropertyInfo(Variant::INT, "materials/location", PROPERTY_HINT_ENUM, "Node,Mesh"), (meshes_out || materials_out) ? 1 : 0));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::INT, "materials/storage", PROPERTY_HINT_ENUM, "Built-In,Files", PROPERTY_USAGE_DEFAULT | PROPERTY_USAGE_UPDATE_ALL_IF_MODIFIED), materials_out ? 1 : 0));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::BOOL, "materials/keep_on_reimport"), materials_out ? true : false));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::BOOL, "meshes/compress"), true));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::BOOL, "meshes/ensure_tangents"), true));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::INT, "meshes/storage", PROPERTY_HINT_ENUM, "Built-In,Files"), meshes_out ? true : false));
-	r_options->push_back(ImportOption(PropertyInfo(Variant::BOOL, "external_files/store_in_subdir"), true));
+	r_options->push_back(ImportOption(PropertyInfo(Variant::BOOL, "external_files/store_in_subdir"), false));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::BOOL, "animation/import", PROPERTY_HINT_NONE, "", PROPERTY_USAGE_DEFAULT | PROPERTY_USAGE_UPDATE_ALL_IF_MODIFIED), true));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::REAL, "animation/fps", PROPERTY_HINT_RANGE, "1,120,1"), 15));
 	r_options->push_back(ImportOption(PropertyInfo(Variant::STRING, "animation/filter_script", PROPERTY_HINT_MULTILINE_TEXT), ""));

editor/import/resource_importer_scene.h

@@ -83,9 +83,9 @@ class ResourceImporterScene : public ResourceImporter {
 	static ResourceImporterScene *singleton;
 
 	enum Presets {
-		PRESET_SINGLE_SCENE,
 		PRESET_SEPARATE_MATERIALS,
 		PRESET_SEPARATE_MESHES,
+		PRESET_SINGLE_SCENE,
 		PRESET_SEPARATE_MESHES_AND_MATERIALS,
 		PRESET_MULTIPLE_SCENES,
 		PRESET_MULTIPLE_SCENES_AND_MATERIALS,